Ecosystems Publications
Recent Publications
Reed D. E., Chu H., Peter B. G., Chen J., Abraha M., Amiro B., Anderson R. G., Arain M. A., Arruda P., Barron-Gafford G. A., Bernacchi C., Beverly D. P., Biraud S. C., Black T. A., Blanken P. D., Bohrer G., Bowler R., Bowling D. R., Bret-Harte M. S., Bretfeld M., Brunsell N. A., Bullock S. H., Celis G., Chen X., Classen A. T., Cook D. R., Cueva A., Dalmagro H. J., Davis K., Desai A., Duff A. J., Dunn A. L., Durden D., Edgar C. W., Euskirchen E., Bracho R., Ewers B., Flanagan L. B., Florian C., Foord V., Forbrich I., Forsythe B. R., Frank J., Garatuza-Payan J., Goslee S., Gough C., Green M., Griffis T., Helbig M., Hill A. C., Hinkle R., Horne J., Humphreys E., Ikawa H., Iwahana G., Jassal R., Johnson B., Johnson M., Kannenberg S. A., Kelsey E., King J., Knowles J. F., Knox S., Kobayashi H., Kolb T., Kolka R., Krauss K. W., Kutzbach L., Lamb B., Law B., Lee S.-C., Lee X., Liu H., Loescher H. W., Malone S. L., Matamala R., Mauritz M., Metzger S., Meyer G., Mitra B., Munger J. W., Nesic Z., Noormets A., O'Halloran T. L., O'Keeffe P. T., Oberbauer S. F., Oechel W., Oikawa P., Olivas P. C., Ouimette A., Pastorello G., Perez-Quezada J. F., Phillips C., Posse G., Qu B., Quinton W. L., Reba M. L., Richardson A. D., Picasso V., Rocha A. V., Rodriguez J. C., Ruzol R., Saleska S., Scott R. L., Schreiner-McGraw A. P., Schuur E. A. G., Silveira M., Sonnentag O., Spittlehouse D. L., Staebler R., Starr G., Staudhammer C., Still C., Sturtevant C., Sullivan R. C., Suyker A., Trejo D., Ueyama M., Vargas R., Viner B., Vivoni E. R., Wang D., Ward E. J., Wiesner S., Windham-Myers L., Yannick D., Yepez E. A., Zenone T., Zhao J., Zona D. (2025). Network of networks: Time series clustering of AmeriFlux sites. Agricultural And Forest Meteorology. 372:110686. doi:
Ferretti P., Martignoni M. M., McManus L. C., Sakal T., Liaghat A., Stevens B., Dahlin K.J.-M., Souza L. S., Cardon Z. G., Silveira C. B., Bordenstein S. R., Roughgarden J. (2025). Theory of host-microbe symbioses: Challenges and opportunities. Cell Host & Microbe. 33:1052-1056. doi:
Weiss M., Holland A. R., D'Amato A. W., Deegan L. A., Farmer W. H., Hoving C., Karmalkar A. V., Latzka A., Magee M., McIntyre P. B., Morelli T. L., Notaro M., Olmstead N., Palmer R. N., Pau N., Renfrew R., Ribic C. A., Sheppard J., Staudinger M. D., Zuckerberg B., Bradley B. A. (2025). Relationship-centered engagement bridges the divide between science and management, and enhances climate adaptation. Bioscience. doi:
Conte M. H., Pedrosa-P脿mies R., Weber J. C., Johnson R. J. (2025). The climatology of the deep particle flux in the oligotrophic western North Atlantic gyre, 1978鈥2022. Progress In Oceanography. 234:103433. doi:
Valiela I., Chenoweth K., Day J. (2025). Meta-analysis of vegetation responses to experimental nitrogen enrichments done in salt marshes under different sea level rise regimes reveal interaction of N supply and sea level rise. The Science Of The Total Environment. 975:179198. doi:
Sullivan H. L., Holtzer J., Deegan L. A., Bowen J. L. (2025). The Effect of Runnels on Salt Marsh Sediment Dynamics, Vegetation, and Nitrogen Cycling. Estuaries And Coasts. 48:73. doi:
Joern G. M., Pedrosa-P脿mies R., Jiang X., Liu Z., Bochdansky A. B. (2025). Characterization of microbial biofilms on marine plastics: community development and density implications for vertical transport dynamics. Frontiers In Marine Science. 12:1581727. doi:
Malhotra A., Megonigal P., Forbrich I., M盲盲tt盲 T., Morris K., Bittencourt Peixoto R., Wilson S., Zheng J., Bailey V. (2025). Revisiting the primary production control on wetland methane emission. doi:
Peck E. K., Walker J. E., Ackerman K. V., Carr J., Correll M. D., Defne Z., Deegan L. A., Eaton M. J., Ganju N. K., Hartley M., Johnson C., Mercer J., Ruskin K. J., Woodruff J. D., Yellen B. (2025). Distribution and disturbances of ditches across salt marshes of the Northeast U.S. with implications for management and restoration. Journal Of Environmental Management. 376:124444. doi:
Hopkinson C. S., Weston N. B., Vallino J. J., Garritt R. H., Forbrich I. (2025). Comparative Metabolism and Blue Carbon Sequestration of Two Wetland-Dominated Estuaries. Ocean-Land-Atmosphere Research. 4. doi:
Simon S. A., Soares A. R., Bornemann T. L. V., Lange A., Griesdorn L., Fuentes A., Dieckmann M., Krok B. A., Ruff S. E., H眉gler M., Moraru C., Probst A. J. (2025). Inferring replication states of bacteria and viruses in enrichment cultures via long-read sequencing. Isme Communications. 5:ycaf041. doi:
Vallino J. J., Ahern O. M., Huber J. A. Deriving microbial food web structure by maximizing entropy production over variable timescales. doi:
Vineis J. H., Bulseco A. N., Cardon Z. G., Bowen J. L. Microbial consortia in salt marsh sediments are sequentially buried over millennia and genomic complementarity analysis indicates an important role in complex carbon decomposition. doi:
Luo E., Pham N. D., Rogers T. J., Vallino J. J., Benner B. E., Trubl G., Huber J. A. Virus-mediated recycling of chemoautotrophic biomass. doi:
Elkassas S. M., Fortunato C. S., Grim S. L., Butterfield D. A., Holden J. F., Vallino J. J., Algar C. K., Allen L. Z., Larson B. T., Proskurowski G., Reddington E., Stewart L. C., Top莽uo臒lu B., Huber J. A. Metabolic and Population Profiles of Active Subseafloor Autotrophs in Young Oceanic Crust at Deep-Sea Hydrothermal Vents. doi: